In its list, the Pakistan foreign office had said the Indian prisoners included "52 civilians and 494 fishermen".
Pakistan has allowed convicted Indian spy Kulbhushan Jadhav to meet his wife, months after a request was made by India's Ministry of External Affairs.
The Jadhav case was taken to the world court on May 8 by India, which accused Pakistan of violating the Vienna Convention and conducting a "farcical trial" for convicting Jadhav without a "shred of evidence".
The statement goes on to reiterate the allegations against Jhadav, saying he was apprehended by Pakistani agencies after he "illegally crossed over into Pakistan" and while he was "working with Indian Intelligence Agency/RAW". As India took the case to International Court of Justice (ICJ) in May, Pakistan even told the United Nations court that "Pakistan doesn't see the merit in a state which sends a spy and is seeking access to a tool for terror".
Pakistan claims its security forces arrested him from restive Balochistan province on March 3 past year after he reportedly entered from Iran.
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Friday's statement said Jadhav had "confessed" in a Pakistani court "that he was tasked by RAW to plan, coordinate and organise espionage, terrorist and sabotage activities aimed at destabilizing and waging war against Pakistan".
Jadhav's sentencing has evoked a sharp reaction in India.
Meanwhile, Jadhav is believed to have filed a second mercy petition with Pakistani Army Chief Qamar Bajwa.
On 18 May, the ICJ ruled that Jadhav must not be put to death by Islamabad until the ICJ has had enough time to pass the final judgment in the case, and ordered a stay against the execution.
Pakistan falsely claimed its security forces arrested Jadhav from Balochistan on March 3 past year. Pakistan will submit its counter-pleadings in the case on December 13.